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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19341416_19341508_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19341416 - 19341508
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTCTTTTATA
Flanking Amino Acid:
DENEDEEEEPVFLKPVIEDR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
87.8
0.85
0.6
83.7
24.5
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
66
0.5
1.6
74.49
37.5

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453