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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1934499_1934599_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1934499 - 1934599
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TATTGTTGTATG
Flanking Amino Acid:
QDLKYIDSEMIVSVLTGKFA
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
43.5
-0.6
2.1
52.76
42.7

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505