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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1934663_1935028_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1934663 - 1935028
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTTCTCAATT
Flanking Amino Acid:
QRDLIGDFSKGYLFHTVDGK
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
79.8
35.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.1
0.61
0.9
69.1
41.8
Minor 5ss
35.1
-1.7
2.7
42.1
44.6
Minor BPS
67.2
0.62
1.5
79.68
36.1

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505