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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19350432_19357489_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19350432 - 19357489
Intron Length:
7058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAATTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
GGTCACTAAAGT
Flanking Amino Acid:
AKELTQLQSKVLYKQKYDAE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1
71.1
35.1
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
45.9
-0.2
2.1
64.23
45.3

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453