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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1935122_1935427_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1935122 - 1935427
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTGGTGGC
5'SS Class:
major
3'SS Sequence:
TGTCTCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCTTCTCTAACC
Flanking Amino Acid:
LPGTPSEDATNLKIVKTQSS
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
55
43.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
77.2
0.61
0.8
74.7
30.6
Minor 5ss
28.5
-2.5
3.2
36.3
40.9
Minor BPS
69.6
0.6
1.6
78.9
36.8

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505