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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1935581_1936230_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1935581 - 1936230
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ACGACTCTAACT
Flanking Amino Acid:
PLVMRKTDMRAKRCRLFGSS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82
0.72
0.7
77.3
24.6
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
52.8
0.17
1.7
67.6
43.2

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505