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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1936306_1936925_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1936306 - 1936925
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCGTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGAGAATGAACT
Flanking Amino Acid:
LELLDEQDLKNDEEIPSDVA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83.8
0.76
0.8
76.4
37.6
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
46.1
-0.2
2
65.42
43.9

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505