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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1937061_1937926_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1937061 - 1937926
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
ATTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGAATATTAAAG
Flanking Amino Acid:
QRQNSSSAQGFPSNEIPTGE
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.5
0.82
0.7
85.4
28.5
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
45.7
-0.4
1.7
47.02
38.8

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505