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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19373953_19375546_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19373953 - 19375546
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATAACT
Flanking Amino Acid:
AQIASTLASDVNYKKDLESL
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.5
0.66
0.7
74.5
29.9
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
73.3
0.81
1.8
94.53
31.9

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453