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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19375652_19379634_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19375652 - 19379634
Intron Length:
3983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTATTTTAATT
Flanking Amino Acid:
ALNISKMHSDVKYKENYEKS
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.78
0.9
77.2
41.6
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
69.2
0.68
1.2
79.53
37.3

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453