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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19379743_19380981_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19379743 - 19380981
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTTGCTTCAACA
Flanking Amino Acid:
SKEAQKMQSEKMYRKEFEES
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
78
0.63
0.9
73.9
35.5
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
68
0.56
1.6
79.34
37.2

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453