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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19384070_19386347_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19384070 - 19386347
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTGCCTTACAG
Flanking Amino Acid:
VKNAAQILNEKQYKKDLETE
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87
0.83
0.8
80.7
31.5
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
58.4
0.12
1.9
68.4
44.9

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453