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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19391159_19395002_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19391159 - 19395002
Intron Length:
3844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATA
Flanking Amino Acid:
VKKNQQNISSIKYKEEIQHA
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.7
0.65
1
73.7
40.9
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
62.4
0.39
1.5
72.8
32.8

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006026
19341353 - 19431805
90453