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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1939398_1939543_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1939398 - 1939543
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTAAAAGA
Flanking Amino Acid:
EKAILESSRLNIRLPLRRIH
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.2
0.79
0.8
81.4
30.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
44.5
-0.4
2.1
58.69
41.8

Associated Gene:

Gene:
CDC25A
Ensembl Gene ID:
ENSAPLG00000008300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008649
1931791 - 1940295
8505