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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19400040_19403947_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19400040 - 19403947
Intron Length:
3908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGGGGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGTCTTACCA
Flanking Amino Acid:
EMDRRPGIIVDLKVWRTDPG
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
48.4
-0
1.3
47.1
44.2
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
66.3
0.51
1.7
78.35
38.8

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047944
19182332 - 19447344
265013
ENSAPLT00000046719
19182332 - 19431805
249474
ENSAPLT00000028833
19182332 - 19441130
258799