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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19400040_19405002_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19400040 - 19405002
Intron Length:
4963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTACTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTCTACT
Flanking Amino Acid:
EMDRRPGIIVERASRYSKQY
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
76.9
31.6
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
52.1
0.15
1.8
77.3
39

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034117
19182332 - 19431805
249474