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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19404041_19405002_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19404041 - 19405002
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
TCTACTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTCTACT
Flanking Amino Acid:
IQSRSLHMLSERASRYSKQY
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.1
60.7
43.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
76.9
31.6
Minor 5ss
43
-0.8
3.4
61.7
45
Minor BPS
52.1
0.15
1.8
77.3
39

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046719
19182332 - 19431805
249474
ENSAPLT00000028833
19182332 - 19441130
258799
ENSAPLT00000047944
19182332 - 19447344
265013