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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19425794_19431628_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19425794 - 19431628
Intron Length:
5835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTCCTTCAACA
Flanking Amino Acid:
MHSQPHSAGLRTYRAMYDYS
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
81
0.7
0.8
77.5
29.8
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
71
0.66
1.5
81.34
33.6

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028833
19182332 - 19441130
258799
ENSAPLT00000006026
19341353 - 19431805
90453
ENSAPLT00000047944
19182332 - 19447344
265013
ENSAPLT00000046719
19182332 - 19431805
249474
ENSAPLT00000034117
19182332 - 19431805
249474