About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19431741_19446261_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
19431741 - 19446261

Intron Length:
14521

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTACTGTTC

5'SS Class:
major

3'SS Sequence:
ATTGTGCCAGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
GTTTTTATAACA

Flanking Amino Acid:
VQPIDDGWMYDDRNLP*

Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.6
0.32
1.1
59.6
40.1

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
66.3
0.37
1
60.2
40.9

Minor 5ss
40.4
-1.1
3.5
55.7
44

Minor BPS
65.7
0.49
1.6
76.59
34

Associated Gene:

Gene:
NEBL

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19182332 - 19447344
265013