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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19550123_19566131_F

Intron Information:

Intron Rank:
125996
Intron Class:
major
Intron Phase:
Intron Coordinates:
19550123 - 19566131
Intron Length:
16009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GCACTGATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
87.9
0.85
0.7
83.3
25
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
43.7
-0.4
2.2
59.66
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044072
19545207 - 19567010
21804