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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19580146_19581926_F

Intron Information:

Intron Rank:
142435
Intron Class:
major
Intron Phase:
Intron Coordinates:
19580146 - 19581926
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGGGTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.2
0.54
1
70.1
44.9
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026732
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022950
19580026 - 19583034
3009