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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19619479_19630148_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19619479 - 19630148
Intron Length:
10670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGGTGTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATATTCTGAAAG
Flanking Amino Acid:
TSAASLFFIERRPSRWPAMK
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
68.5
0.42
1
61.1
44.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
55.8
0.05
1.6
60.98
40.2

Associated Gene:

Gene:
PLXDC2
Ensembl Gene ID:
ENSAPLG00000013705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046120
19619362 - 19757261
137900
ENSAPLT00000014293
19619362 - 19757261
137900