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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19630310_19642068_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19630310 - 19642068
Intron Length:
11759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGTTACTGTACT
Flanking Amino Acid:
KIALHLKDNGASTDDSAAEK
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.8
0.56
0.9
69.4
35.7
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
50.3
0.09
2
73.59
42.5

Associated Gene:

Gene:
PLXDC2
Ensembl Gene ID:
ENSAPLG00000013705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046120
19619362 - 19757261
137900
ENSAPLT00000014293
19619362 - 19757261
137900