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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19642108_19643487_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19642108 - 19643487
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
ATTTCCTTTATA
Flanking Amino Acid:
SQLPTSLPTEDDTKIALHLK
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
71.6
34.8
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
82.7
0.74
0.7
77.3
30.7
Minor 5ss
34.5
-1.8
2.9
43.9
43.9
Minor BPS
74.1
0.75
1.5
81.62
33

Associated Gene:

Gene:
PLXDC2
Ensembl Gene ID:
ENSAPLG00000013705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046120
19619362 - 19757261
137900
ENSAPLT00000014293
19619362 - 19757261
137900