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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19646577_19660466_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19646577 - 19660466
Intron Length:
13890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TCATCATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATCATT
Flanking Amino Acid:
FNCSWCSKLQRCSSGFDRHR
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.8
0.4
1.1
67.4
37
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
53
0.18
2
77.53
39.1

Associated Gene:

Gene:
PLXDC2
Ensembl Gene ID:
ENSAPLG00000013705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046120
19619362 - 19757261
137900
ENSAPLT00000014293
19619362 - 19757261
137900