Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19660549_19661470_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19660549 - 19661470

Intron Length:

922

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATCTGCTTCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

GTTTATATATCT

Flanking Amino Acid:

LSAVEMIPLPTCLQFNSCGP

Intron Amino Acid Position:

298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

23.6

Major BPS

79.2

0.73

75.3

39.4

Major PPT

70.3

0.46

0.9

39.3

Minor 5ss

36.8

-1.5

2.7

42.6

38.4

Minor BPS

0.01

74.83

41.6

Associated Gene:

Gene:

PLXDC2

Ensembl Gene ID:

ENSAPLG00000013705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046120

19619362 - 19757261

137900

ENSAPLT00000014293

19619362 - 19757261

137900