Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19661567_19672731_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19661567 - 19672731

Intron Length:

11165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTTTCCTGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TACAAAATAATA

Flanking Amino Acid:

VVVHRIQQIPNVRRRTIYEY

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

75.9

39.9

Major BPS

70.8

0.52

70.6

31.6

Major PPT

79.6

0.67

0.9

30.8

Minor 5ss

39.6

-1.2

2.9

57.1

41.1

Minor BPS

42.8

-0.5

1.9

52.89

38.5

Associated Gene:

Gene:

PLXDC2

Ensembl Gene ID:

ENSAPLG00000013705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046120

19619362 - 19757261

137900

ENSAPLT00000014293

19619362 - 19757261

137900