Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19672866_19687217_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19672866 - 19687217

Intron Length:

14352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTAGTCCTT

5'SS Class:

weak_major

3'SS Sequence:

TTTTTGAGTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

AATGCTGTAATT

Flanking Amino Acid:

STVRYFDNGMYSSGISFCFV

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.2

0.05

1.1

51.9

44.8

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

79.8

0.67

78.1

40.1

Minor 5ss

44.3

-0.6

3.4

66.3

40.2

Minor BPS

50.7

0.1

2.1

70.85

40.9

Associated Gene:

Gene:

PLXDC2

Ensembl Gene ID:

ENSAPLG00000013705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046120

19619362 - 19757261

137900

ENSAPLT00000014293

19619362 - 19757261

137900