Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19687348_19730900_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19687348 - 19730900

Intron Length:

43553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTATTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTTTCTTTATT

Flanking Amino Acid:

FLREITVATGGFIYTGEVVH

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

71.1

40.4

Major BPS

83.9

0.84

73.9

41.3

Major PPT

85.1

0.79

0.7

81.7

28.7

Minor 5ss

32.6

-2

3.1

35.3

41.4

Minor BPS

75.1

0.87

1.5

91.36

31.7

Associated Gene:

Gene:

PLXDC2

Ensembl Gene ID:

ENSAPLG00000013705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046120

19619362 - 19757261

137900

ENSAPLT00000014293

19619362 - 19757261

137900