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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19730971_19753893_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19730971 - 19753893
Intron Length:
22923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATTTT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGATTTTATTT
Flanking Amino Acid:
EGHDNTTQIERVNLSFDFPF
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
81.2
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
55
0.23
1.6
71.47
40.5

Associated Gene:

Gene:
PLXDC2
Ensembl Gene ID:
ENSAPLG00000013705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046120
19619362 - 19757261
137900