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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19734800_19753893_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19734800 - 19753893
Intron Length:
19094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATTTT
5'SS Class:
major
3'SS Sequence:
CCCCCCATGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATCTGTATTT
Flanking Amino Acid:
EGHDNTTQIEEDTDHNYYTS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
81.2
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
59.2
0.21
0.9
57.9
31.7
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
48.1
-0
2.2
69.51
42

Associated Gene:

Gene:
PLXDC2
Ensembl Gene ID:
ENSAPLG00000013705
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014293
19619362 - 19757261
137900