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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19889281_19889858_R

Intron Information:

Intron Rank:
150213
Intron Class:
major
Intron Phase:
Intron Coordinates:
19889281 - 19889858
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
AATTTTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
53.8
44.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.8
0.67
1
73.7
40.8
Minor 5ss
33
-1.9
3.4
48.4
47.2
Minor BPS
69.2
0.68
1.6
87.82
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028397
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048270
19888730 - 19892526
3797