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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19889975_19892262_R

Intron Information:

Intron Rank:
150214
Intron Class:
major
Intron Phase:
Intron Coordinates:
19889975 - 19892262
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGCACCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGCACCTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
65.9
0.36
1
60.5
40.2
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
69.7
0.61
1.3
72.26
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028397
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048270
19888730 - 19892526
3797