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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19913253_19922496_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19913253 - 19922496
Intron Length:
9244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGACTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTTTTCTTGACT
Flanking Amino Acid:
CFLWKKKEPEMKLEEPTNTS
Intron Amino Acid Position:
2045

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
70
0.45
1.1
67.8
42.6
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
87.9
1.28
0.8
98.86
22.7

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640