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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19922761_19955385_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19922761 - 19955385
Intron Length:
32625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
GTTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCAGAAAT
Flanking Amino Acid:
CIIKDDIPLCQCGKEWKGNR
Intron Amino Acid Position:
1987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.3
0.73
0.8
76.6
36.5
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
58.3
0.34
1.8
83.24
37

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640