About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19956689_19964592_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19956689 - 19964592
Intron Length:
7904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAC
U12 Branch Point Sequence:
CTGACAATAACT
Flanking Amino Acid:
CPLNEDEVGCSLTDCFNGSV
Intron Amino Acid Position:
1923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.3
39.3
Major BPS
62.6
0.31
1.2
55.1
41.7
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
42.5
-0.8
2.9
59.1
45.3
Minor BPS
49.8
0.06
2
71.1
45.1

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640