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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19964869_19980126_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19964869 - 19980126
Intron Length:
15258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
ISFTPECMDGGPAEPRPPAC
Intron Amino Acid Position:
1831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640