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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19985961_19992032_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19985961 - 19992032
Intron Length:
6072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCCA
5'SS Class:
major
3'SS Sequence:
TCTTTTTATTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATC
Flanking Amino Acid:
QTGPDTDHTPGKGQRFLYVN
Intron Amino Acid Position:
1711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
57.8
40.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
66.8
0.38
1.7
81
35.7
Minor 5ss
37.2
-1.4
3.2
48.7
46.9
Minor BPS
68.5
0.56
1.2
72.73
32

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640