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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20008697_20033635_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20008697 - 20033635
Intron Length:
24939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCAAACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAAAC
Flanking Amino Acid:
AAGCIQVLIKTDVGTMKIWS
Intron Amino Acid Position:
1554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.9
0.45
1
64.6
40.6
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
56.8
0.19
1.8
73.17
37.3

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640