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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20033794_20036881_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20033794 - 20036881
Intron Length:
3088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCAGGAATA
Flanking Amino Acid:
PRDHTLGNRTGKFLYLEATA
Intron Amino Acid Position:
1501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.2
38.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.65
0.9
75.3
38.6
Minor 5ss
48.1
-0.2
2.5
64.1
42.5
Minor BPS
49.3
-0
2.3
73.52
38.3

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640