About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20037128_20059151_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20037128 - 20059151
Intron Length:
22024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
TTCACCAGGATA
Flanking Amino Acid:
PAEPTALPPTGSCSHGYWQC
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
87.3
0.84
0.7
84.7
23
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
47.1
-0.2
1.8
60.89
39

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640