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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20059450_20064862_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20059450 - 20064862
Intron Length:
5413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTATACTTGAGG
Flanking Amino Acid:
VLSRRNKNCKILFYYHMYGA
Intron Amino Acid Position:
1320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
54.6
-0
1.9
64.46
43.3

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640