About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20069521_20070461_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20069521 - 20070461
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
ATCTCTATAATT
Flanking Amino Acid:
VFLGIRSNFQIIFRAKRGVS
Intron Amino Acid Position:
1166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
74.5
0.55
0.9
75.1
39.1
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
64.5
0.53
1.6
78.92
37.7

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640