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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20070573_20074392_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20070573 - 20074392
Intron Length:
3820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTGTGACC
Flanking Amino Acid:
MNGSTVGSLEVLCKTGNKTS
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
58.7
0.25
2
76.51
34.1

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640