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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2007901_2010181_R

Intron Information:

Intron Rank:
140490
Intron Class:
major
Intron Phase:
Intron Coordinates:
2007901 - 2010181
Intron Length:
2281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
59.4
0.37
1.9
81.06
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022964
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032255
2007822 - 2015648
7827
ENSAPLT00000043793
2007822 - 2010434
2613