About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2007901_2025881_R

Intron Information:

Intron Rank:
140484
Intron Class:
major
Intron Phase:
Intron Coordinates:
2007901 - 2025881
Intron Length:
17981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGGATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
76.3
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
40.6
-1
3.1
57.7
46.7
Minor BPS
59.4
0.37
1.9
81.06
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022964
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019923
2007806 - 2029105
21300