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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20087205_20089672_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20087205 - 20089672
Intron Length:
2468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATCTCTAAAG
Flanking Amino Acid:
CSDKSDESDCAMEVCNFEDK
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71
0.47
1
71.1
33.6
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
50.7
-0.1
1.8
58.16
43.3

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640