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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20089850_20092446_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20089850 - 20092446
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CGTTTCTTAAAG
Flanking Amino Acid:
MSFLGCTLYNGNLPTISTTL
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
73.8
0.54
1
74.5
34.2
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
65.1
0.33
1.5
64.96
42.7

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640