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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20105464_20107055_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20105464 - 20107055
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GCTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
ACTGCCTTCACT
Flanking Amino Acid:
CGDGSDEENCNPDLQCNFEN
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
65.1
0.38
1
57
39.5
Major PPT
80.6
0.69
0.9
76.7
37.4
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
62.9
0.49
1.9
77.84
44.7

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640