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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20107424_20108685_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20107424 - 20108685
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
TCTATCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACACCTCTAACT
Flanking Amino Acid:
QAGSNCTMSFWYYNYGQSVG
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.3
36.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.1
0.61
0.8
74.6
34.8
Minor 5ss
37.8
-1.4
3.1
44.4
45.6
Minor BPS
54.9
0.23
1.7
69.6
41

Associated Gene:

Gene:
MALRD1
Ensembl Gene ID:
ENSAPLG00000023464
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032674
19913135 - 20166774
253640